rs238763420 SNP Detail

Summary

• ID
  rs238763420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22535663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGCACA TTGATTAGTT
  GGGAGTCCTG CCATTAATAG TCACCTACTG CAAACAGCTC TCTAACCAAG GGCAAGAGCA
  GCATTGCTCT ACTGGCATAA ACACACATTT AGAAATCAGA TCCATATCCC ATTCATAAAG
  AAAAGGGAGC ATATTTCCCC TACACAGTCA CTTCCTTTTT CCCCTCTACA GTAAACCATA
  Y
  TAATTTGCAT TTATTAACTA TACAAATCAA TGAGTTGGTT GTGGCACTCC AGGCATGGAC
  CAATATACTT TGATCATCGT CATCCTCTAT GTTCCCCTTT CTCTAACTCC AAGTCTTCTA
  CTTTCACATG TTTCCCCCAG TGGCACTGGC ATGTTAACTG CTGGTATCAG TTCTTATTTA
  GGCTTCCACA TTGTTGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321765792	CHEV_6_22485664	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238763420					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22535663 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	1745 bp proximal
Rr627120	regulatory region 627120	1801 bp proximal