rs238758072 SNP Detail

Summary

• ID
  rs238758072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105710158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGAGGAA CCCCTTGGAA
  GGAAGGAAGT TGTTAGGGAG TTGTTTTAGA AAAGAGGGAG TGATCAGTCA GTTCCCTTGC
  CTACTGCTGA AATAGCTAAG AAGACAATTG AATCTCAATC TCTGCCTCAC CCCCACCCCA
  CAGTCCCCAT CCCCGCCACC CTGATTGGTT CATGCTAGAC AAACTGCCAC TGAGCCTCAT
  Y
  CTCAGTCAAG AGTTGGGAAT TTAACCACTG ACCAAGTTTG GCCTGAAGTT TGTTGAGAAG
  CTTAATGAAA ACCCTTCCAG TGTTATCACA TGGAGAAATG TCTGATTGGG GTGTGTTGAG
  AGAATGAAAG AGAGGCGAGG AAGACAGCCA GGAGCTGGCT GAGCCTAGCA ACAGTCAGTA
  GTGGGAATGG TGTGGGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359118198	MGP_WTSI_3_105605760	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	T	C	C	T	T	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238758072					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	T	C	C	T	T	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359118198	MGP_WTSI_3_105605760	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105710158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13662	CpG island 13662	1040 bp distal
Rap1a	RAS-related protein 1a	1506 bp upstream
Rr582781	regulatory region 582781	1994 bp distal
Rr582782	regulatory region 582782	1568 bp distal
Rr582783	regulatory region 582783	1016 bp distal
Rr582784	regulatory region 582784	757 bp proximal
Tssr31081	transcription start site region 31081	749 bp upstream
Tssr31082	transcription start site region 31082	780 bp upstream
Tssr31083	transcription start site region 31083	1078 bp upstream
Tssr34931	transcription start site region 34931	1527 bp upstream
Tssr34932	transcription start site region 34932	1465 bp upstream