rs238747914 SNP Detail

Summary

• ID
  rs238747914
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36744709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGC TAACTCGAGT TCTGTACTTT
  C
  CAAGAAGCGT TTTTCAAGGG AGAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320704377	CHEV_3_36589482	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238747914					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36744709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13091	CpG island 13091	within coordinates
Rr575390	regulatory region 575390	1513 bp distal
Rr575391	regulatory region 575391	within coordinates
Trpc3	transient receptor potential cation channel, subfamily C, member 3	433 bp upstream
Tssr33044	transcription start site region 33044	388 bp upstream