rs238710358 SNP Detail

Summary

• ID
  rs238710358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108815275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGTGTTG GCTGTTGTTT
  TTGATGAGGT CTACCAAGCT TCATCCTGCT TTTACACTCC TTGTCCCTCA TCGACCTTTG
  GAAGCTGGAG ACCTTGAAAC TTAAATGCAA GACATGTCCT GATAAGCCAT ACTGGGCGTG
  TCAGGCTCTC ATGTACTTCA TGGCACAGCA CCACAGAGCA TGGGTTCCAG GGGATATCCC
  Y
  AGTGCCCTGC AGTCTCCTTA GTAATTTCAC AAACTCTCCT TTGTTCTCTC TGAGAAGTCT
  TTACCATTAG AAAGCCATTA AATCTTATAT CAAGTCCTGT ATTTAATAAT TTTTCTGATT
  CCTTTAAATG TCACCAAGAA ATGTTTAAAG CTGTCAGGTA AGAGTTGGAA TTGGGTAAGG
  TAGCTAAGTT TATACCACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369596725	MGP_WTSI_6_108788308	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238710358					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369596725	MGP_WTSI_6_108788308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108815275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368140	regulatory region 368140			1940 bp downstream
Rr368141	regulatory region 368141			1267 bp upstream
Rr636220	regulatory region 636220			1442 bp distal
Rr636221	regulatory region 636221			within coordinates
Rr636222	regulatory region 636222			1005 bp proximal
Tssr58111	transcription start site region 58111			2000 bp downstream
Tssr58112	transcription start site region 58112			1977 bp downstream
Tssr58113	transcription start site region 58113			1958 bp downstream
Tssr58114	transcription start site region 58114			1944 bp downstream
Tssr58115	transcription start site region 58115			1907 bp downstream
Tssr58116	transcription start site region 58116			1681 bp downstream
Tssr58117	transcription start site region 58117			1662 bp downstream
Tssr58118	transcription start site region 58118			1616 bp downstream
Tssr58119	transcription start site region 58119			1575 bp downstream
Tssr58120	transcription start site region 58120			899 bp upstream