rs238685152 SNP Detail

Summary

• ID
  rs238685152
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86772367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATACATAA AGTAAAACAA
  TAATTTTTTT ATAAATATGA GAAGAGCGCC AGGCAGTGGT GGCGCACGCC TTTGATCCCA
  GCCCTTGGGA GGCAGAGGCA GGCAGATTTC TGAGTTCAAG GTCAGCCTGG TCTACAGAGT
  GAGTTCCAGG ACAGCCAGGG CTACACAGAA AAGCCCTGTC TCGAAGAATA TATATATATA
  W
  ATGAATGAAA AGAGCACAGA CTGCTCTTCT AGAGGATCCC AGGTTCAATT CCCAGCACCC
  ACATGGTGGT TCACAACCAT CTTTAACTCC AGTTCCAAGA GATCTAACAA TCTCCTCTGG
  TCTCCATGGG CATCAGGCAT GCAAGTGGTG CACAGGCATG CATGCATACA GACAAAAACA
  CCCATACACA TTTTTAAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369092742	MGP_WTSI_6_86745379	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238685152					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369092742	MGP_WTSI_6_86745379	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86772367 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	1801 bp upstream
Cpgi17670	CpG island 17670	1512 bp distal
Rr633515	regulatory region 633515	1812 bp distal
Rr633516	regulatory region 633516	1311 bp distal
Rr633517	regulatory region 633517	398 bp distal
Tssr61864	transcription start site region 61864	1803 bp upstream
Tssr61865	transcription start site region 61865	1784 bp upstream
Tssr61866	transcription start site region 61866	307 bp downstream
Tssr61867	transcription start site region 61867	1183 bp downstream