rs238672394 SNP Detail

Summary

• ID
  rs238672394
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36917929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCCACA AGGGTTATCT
  TCCATCCGGG GAATATTAGA TTTCTTCCTT CCTCGCCCCA TCGGTTGTGG TGTTGACAGT
  GGGATGTCCG GTAAAGGGGA CGAATTCTTG TAAATTTCCT CTGAGCAGTC ATGGGTTCTG
  GAACGGAGAA AGTAGGTTTC AGGTGGTTTC GCGTTGCTGC TTTCATCCCG TGCATGACAA
  S
  GAAGCAGATT TAATCTGACA AGTATAAAAG TGGATGAGTT AGTCAGAATA TTTGACTTAG
  CAATGACTGC TATGTGCTAT TTTAATATGC GCTCATACAG TTTGTAACAA AAAGGTGAAG
  CCTTTCCCCA CTTTGTAGCT GAGAACCTTG GAACAGAACT GTTTCAAACC TGACTTTCTC
  ACTTTATGGC CCCTCAGTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320705831	CHEV_3_36762702	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238672394					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36917929 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bltp1	bridge-like lipid transfer protein family member 1			Intron
				Noncoding-Transcript-Variant
Cpgi13092	CpG island 13092			189 bp distal
Rr575410	regulatory region 575410			664 bp distal
Rr575411	regulatory region 575411			within coordinates
Tssr28876	transcription start site region 28876			1769 bp downstream
Tssr28877	transcription start site region 28877			1740 bp downstream
Tssr28878	transcription start site region 28878			633 bp downstream
Tssr28879	transcription start site region 28879			616 bp downstream
Tssr28880	transcription start site region 28880			603 bp downstream
Tssr28881	transcription start site region 28881			590 bp downstream