rs238668026 SNP Detail

Summary

• ID
  rs238668026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102419137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGATTCAT AAGCATGTAT
  GTACACACAC ACACACACAC ACACACACAT CTAATTCCTA AATATAACCT CTTCAGTCTG
  GATAATGTTA TATATACATA ATGATATGTA TATTTTCAGG GATGACCATT TGGCCTTGAA
  CAACTAATTG GTGTGCTCTT CCCTGGGGAC GAGCACCTCC TCCATTCCTG GCATTCCTCT
  R
  TTTTTTAGAG TTCCTTGTGT ATGGCTGAGC CTTGTGGACC TTTCTTCATC CAGTTTGGCA
  TCCAGTCCAC TGATGTCATC CTCACTCAGC TCGTGCAGTC GTGCATGGGA CTTAATAGTA
  GCTTCTGATA TTGCTAGGAG ACACAATTTC CAAACAAACT CCCTGATCTT CTTGCATTTA
  TGATCTTTCT GCCCCCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439074	CHEV_2_102428949	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238668026					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102419137 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	362 bp downstream
Rr561706	regulatory region 561706	1167 bp proximal
Rr561707	regulatory region 561707	1399 bp proximal