rs238650300 SNP Detail

Summary

• ID
  rs238650300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCATCTC TGTCCTTCCC
  TTTTCCAGAT CCCCCTCCCT TTACTTCTCC TGCAATAAAT CTTTATTCTA GGCTTGTCAG
  TGGGTGTGAT TCCTGGGGGT GGGGGTGGGG GCATCTTGGC AGGGCCTTCT GAGGTGCTCC
  CTCCCCCTCC TGCTGCAATA TACCACGTTA CACAGCATAA CACTGTGAGC ACTTAGTGGA
  Y
  AGGATTAAAG GGACACTGGG GAAGATGGGT TTACTGGAGA GATGGCCAAC CTCAAGTTGA
  AATAGACGGG ATAGATACAG TAACACACAC CTATTGTCCC AGCATTCAGG AAGTTAGTGA
  CTCTAGCCAC CTCCCAGGCC CCCAGGAAGA ACAGAAGTGC AGCTAGAGAC AGCTCCCTTG
  TCAGCTGGTT CAGAGCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363423243	MGP_WTSI_4_137324209	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238650300					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363423243	MGP_WTSI_4_137324209	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495605 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			1868 bp upstream
Rr602708	regulatory region 602708			1879 bp distal
Rr602709	regulatory region 602709			1635 bp distal
Rr602710	regulatory region 602710			534 bp proximal
Rr602711	regulatory region 602711			1339 bp proximal
Tssr44134	transcription start site region 44134			1850 bp upstream
Tssr44135	transcription start site region 44135			1828 bp upstream
Tssr44136	transcription start site region 44136			1793 bp upstream
Tssr44137	transcription start site region 44137			1369 bp downstream
Tssr44138	transcription start site region 44138			1400 bp downstream
Tssr44139	transcription start site region 44139			1654 bp downstream
Tssr44140	transcription start site region 44140			1668 bp downstream
Tssr44141	transcription start site region 44141			1685 bp downstream
Tssr44142	transcription start site region 44142			1694 bp downstream
Tssr44143	transcription start site region 44143			1710 bp downstream
Tssr44144	transcription start site region 44144			1736 bp downstream
Tssr44145	transcription start site region 44145			1761 bp downstream