rs238644925 SNP Detail

Summary

• ID
  rs238644925
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54459419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTTTCC TTTGTCTATT
  AAACTAAAAC AGTCCTTGGC TTCCTCAGTT TCAAGTGAGG AGCTTTTCAG TTCTACATTT
  ACAAGTTTCT CGTCTTCTAA GTGGAGCATC CTGGCCAACA CCACAAACCT AAATATTTTT
  GCTAGTACAA GTACCATCCA CTGTAGACGC GTTCTTTACA GAGGAAAGCC TGGCTTCTCC
  S
  TGCTTGGGTC TGGCCAAACA GACAGTCTGC CAGGCTTACC ATGAGAGATC AGCTTTCCGA
  CAACAGCATG AGGAATATTT CCCACCCAGG GCTGAATGAC TCCTGACAGG AGGTTGCAGG
  TTTGGCAAGA CACCACAGGG ATCAGGCCAA GCCAAACACG GAGTGGAAAA CTCTATTCAG
  CACTGTACCA TAGTCGGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771851	CHEV_3_54355920	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238644925					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54459419 () rs orientation: forward

Symbol	Name	Function Class
Rr576802	regulatory region 576802	within coordinates
Rr576803	regulatory region 576803	1928 bp proximal