rs238643556 SNP Detail

Summary

• ID
  rs238643556
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137571490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGTATTC ATCGACACCT
  GAAATCTAGG ACAACCAGCC ACGGACGTGT GGGCGCGACC GCCGCTGTGT ACAGCGCAGC
  CATCCTGGAG TACCTCACCG CAGAGGTAAG CGGGAGTACG CCTGTGATCT GGAAAAGCTC
  TGGGGGGGCG GGGGAAAGTG GCGAGAGAGG AGGAAAGTGA TGCAAGAAAA CTCGCAGGCC
  S
  TAAGAGCGGC GCGCAGACCG AGGGAGCGCT AGAGGGAGCT CGCGTTCAGC CGAGGAGGCT
  GCTGGGCCAG AGTGTGCTGC TCCTGCAAAT GCAATTGCGT GCCCCTTCGG GGTTTTTTGG
  GTGGTTTTTT TTTTTTTTTT GCATAATTCT GCATAATTTT ATCATTCAGG TAGTAGGGAA
  TGACAACAGT TGGTAAATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894904	MGP_WTSI_3_137528693	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238643556					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894904	MGP_WTSI_3_137528693	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137571490 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13866	CpG island 13866			within coordinates
Cpgi13867	CpG island 13867			1622 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14			1311 bp upstream
Gm43403	predicted gene 43403			1403 bp upstream
H2az1	H2A.Z variant histone 1			Intron
				Noncoding-Transcript-Variant
Rr367565	regulatory region 367565			1222 bp downstream
Rr398061	regulatory region 398061			within coordinates
Rr585997	regulatory region 585997			1576 bp distal
Rr585998	regulatory region 585998			1232 bp distal
Rr585999	regulatory region 585999			1413 bp distal
Rr586000	regulatory region 586000			1106 bp distal
Rr586001	regulatory region 586001			1135 bp distal
Rr586002	regulatory region 586002			995 bp distal
Rr586003	regulatory region 586003			494 bp distal
Rr586004	regulatory region 586004			22 bp proximal
Rr586005	regulatory region 586005			507 bp proximal
Rr586006	regulatory region 586006			1456 bp proximal
Tssr31912	transcription start site region 31912			1204 bp downstream
Tssr31913	transcription start site region 31913			1165 bp downstream
Tssr31914	transcription start site region 31914			1138 bp downstream
Tssr31915	transcription start site region 31915			608 bp downstream
Tssr31916	transcription start site region 31916			139 bp upstream
Tssr31917	transcription start site region 31917			171 bp upstream
Tssr35855	transcription start site region 35855			1398 bp upstream