rs238623122 SNP Detail

Summary

• ID
  rs238623122
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67511694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTAGCC TTTGCTTAAC
  TCTCCCGGTC AGGTTTCCAG TGACTAGACA AGGAATTTCA GAAATGCGTC CTTAAAAAAC
  CAAGGGCGAG GGAGGTGACC TGAGCTCAGC ATCTAGAGAA CTTGTTTGTG GAGAGAGAAG
  GAAGAGGTCA AAGCTGGGAG GAAAATTACC TCCTGACTGA GAATTAACAG GCCAACCCAT
  S
  TGGTCTGAGG TGCCGAGGAA GTCGGGGCAT CCTACAGGAA ACCTACAAGC TAGGTTCGCT
  TCTCATCTCC CCCAGCTCCT TAAGCTCCAC CTTTTTGTAT TTGCCCGACT TCCTCCGTTT
  GGTGACCACC AAGACCACCA CACCAGCCAC TACCGCTACC GAGACGACAG CGATGACGGC
  AATGACGCCG GCGGTGAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368651681	MGP_WTSI_6_67484704	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238623122					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368651681	MGP_WTSI_6_67484704	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67511694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	1302 bp distal
Cpgi17512	CpG island 17512	within coordinates
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	1404 bp upstream
Rr368087	regulatory region 368087	1337 bp downstream
Rr631666	regulatory region 631666	1415 bp distal
Rr631667	regulatory region 631667	914 bp distal
Rr631668	regulatory region 631668	81 bp proximal
Rr631669	regulatory region 631669	524 bp proximal
Rr631670	regulatory region 631670	1075 bp proximal
Rr631671	regulatory region 631671	1076 bp proximal
Rr631672	regulatory region 631672	1248 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	mRNA-UTR
Tssr1869	transcription start site region 1869	1372 bp upstream
Tssr1870	transcription start site region 1870	1241 bp downstream
Tssr1871	transcription start site region 1871	892 bp downstream
Tssr1872	transcription start site region 1872	62 bp downstream
Tssr61254	transcription start site region 61254	1047 bp upstream
Tssr61255	transcription start site region 61255	20 bp downstream
Tssr61256	transcription start site region 61256	484 bp downstream
Tssr61257	transcription start site region 61257	975 bp downstream
Tssr61258	transcription start site region 61258	1073 bp downstream
Tssr61259	transcription start site region 61259	1118 bp downstream