rs238599040 SNP Detail

Summary

• ID
  rs238599040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152791057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACAGCTTT CTGTCCCACC TACCAGCCCT
  GTAATGGAGA GTTTGGAGTA CCTGCAACAG AGGCTGGGGT GATTCGTGGA TAGAGATGAT
  ATGTGTGATC TTATTCCGGC CCAGCTGATC CGGGTCTTTG GCATCTGAAA GAAACAGGCC
  R
  CTTGAGCCAA GTTGGTAGGT GTGACTTATT TATTCCTAAT GACCAACTGC AGCAAAAGCC
  AGTATCCCGC TTGTATTCTC ACCCCTCCCC TGCCCTCTTG GCCCACCCCC TCCACGCTTG
  CATGTTCATT CCCCCACCTC TGGGGCACTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320563539	CHEV_2_152774873	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238599040					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152791057 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dusp15	dual specificity phosphatase-like 15			Intron
				Noncoding-Transcript-Variant
Rr567515	regulatory region 567515			1688 bp distal
Rr567516	regulatory region 567516			1411 bp proximal