rs238583354 SNP Detail

Summary

• ID
  rs238583354
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114871250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCTGCAA CATTGCACAA
  CCCTCTCATG GGCCCAGGGC CCTGTGGGGC AGGGGCCCAG GCAGCTGAGG CACATTTATT
  TTCTTTTAAA TACTGAGTCT CCGGCACAGA GATGAACAGC TGAGGAGAAG GTGCACAGAA
  ATCAGACTCT TTTCAGCAGT TCAGCTGTGG CCATCGGGTT CTGGGTCACT TTTTGTTTTT
  W
  AAAGAAGGGC TGTTGGGCAA CTTGGTGAGT AGGCCCAAGC CAGTAGAGAT AAAAGATGTG
  ACATACTGTC TGCCACAGCC CAAGTCTGGC CCATACTTCC ACTGCTCAGT GACCGAGTCG
  CTGTCCTCCA CTCCTTTGGT TATAATAAGA AACACCTTTC CAGTGTTCAG AGTCAGATCT
  TAGAACCAGG AGGCTGAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914957	CHEV_6_114844307	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238583354					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114871250 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	347 bp downstream
Rr636858	regulatory region 636858	1277 bp distal
Rr636859	regulatory region 636859	within coordinates
Rr636860	regulatory region 636860	679 bp proximal
Rr636861	regulatory region 636861	776 bp proximal
Vgll4	vestigial like family member 4	Intron