rs238578479 SNP Detail

Summary

• ID
  rs238578479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131790075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGCAAC CTTTGCTCCT
  GGTCTCCTGG GTGACCAAAC CTCTCCTAAC CCAGAGCTTG CTGGCAAAGC TTGTCTCCTG
  CAGTGTTTGT GCTCCTGGCT GATTGCTGCT ACTGGCGCCC CCAAGTGCTG CAAGCCAGTC
  AGCGCGTCAG AGTGGTTCGC TCGGTGGCCC TCTGCCTCTG TGGAACAGTG CAGAGAACTC
  Y
  GAGCCTCAAA GACTGACTTG AAAGGCTAGC CAAGGCCTCC GGGCGGGGGA GGGGTGGGAG
  TGGGGGTGGG GGAACGAGCG GGGCAGCGCT CAAGAGGCAG GACCAGAAGT TTCTGGCCCA
  CTTCACCACC CACCCGGTTC CCCATCAGGC TTTTTATTCT TGCCTGGGAT TTCCTCTTTG
  CAGAGGACGC GTTGGCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359754899	MGP_WTSI_3_131747278	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238578479					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359754899	MGP_WTSI_3_131747278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131790075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13841	CpG island 13841	913 bp proximal
Dkk2	dickkopf WNT signaling pathway inhibitor 2	978 bp upstream
Gm22421	predicted gene, 22421	1922 bp upstream
Rr585410	regulatory region 585410	254 bp distal
Rr585411	regulatory region 585411	68 bp distal
Rr585412	regulatory region 585412	488 bp proximal
Rr585413	regulatory region 585413	989 bp proximal
Tssr31747	transcription start site region 31747	967 bp upstream
Tssr31748	transcription start site region 31748	1136 bp upstream
Tssr31749	transcription start site region 31749	1465 bp upstream