rs238575344 SNP Detail

Summary

• ID
  rs238575344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114354705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGTCCC ACTGGGCTGG
  AAGCCATGGC ATTTAGCAGT TGGTTCAAAT GCTTTAGTCA GTTGAAGCCA CCCAGGGCTG
  AAAGTATTTT GGAACGTCTG AAATTGGAGT CTGATTACCT CTCCAAACAA GAAAGCTCTT
  GGGCCTAATT TAGGAGAAAC TGAGTCACAG CTCCCAAGTT CTATTCAGTT CAAAGCCACA
  R
  ATAAAATTAT TAGTCATAAA GAGTACACCT CACCACTATC AGAAAGAGAT AGTAGAATGC
  CAAGGTTAAG ATGGGGGCAG GGTGCTCCAG GTTCAGTCTT ACCTATAGAA TTCCATTTCT
  ACACTTGCAG GTGTATGGTC TTGGGCAAAC CATTTAGCCT TTCAAAGCCC CAGATTCTAT
  GTTGCAGAAT GGGACTAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321274300	CHEV_4_114170113	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238575344					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114354705 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597585	regulatory region 597585			1142 bp distal
Rr597586	regulatory region 597586			338 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant