rs238566177 SNP Detail

Summary

• ID
  rs238566177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116762969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTTAT CTCCCTCTGC
  TTGGCTTTAG GTAATGGTGA TGGCTCCTTT AGTAACCGAA GAACCCTTAG AGTAGAATAT
  TTGCATCAAG CTCAGCTCCC CTCTCAAAGT CCCACCGCAG GCAGCCTTCT GACAGAGACC
  TTAGACTCTT AGGTCTTGGA AAGCAAAACA AAACAAAACA AAACAAAAAA ACCCAAAGGT
  R
  TTAACGTGAT GATTGATGTT GGATATCTGG GGACTGCAGC ACCTTTTTTG GACCCCATTC
  AAAAAAAACA AAAAACAAAA AACAAAAAAC AAAACAAAAC AAAACAAAAA AACAAACCCC
  GACAATCTTC AATTTCAGGA AGGTGCCCAT TTTGACAGCC TGAAGTTATG CAAGAGCAAG
  GAGCGAGCCT GTGAAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359366541	MGP_WTSI_3_116672238	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238566177					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359366541	MGP_WTSI_3_116672238	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116762969 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	450 bp distal
Gm52613	predicted gene, 52613	1307 bp downstream
Palmd	palmdelphin	333 bp upstream
Rr583817	regulatory region 583817	1043 bp distal
Rr583818	regulatory region 583818	2 bp distal
Tssr35360	transcription start site region 35360	769 bp upstream
Tssr35361	transcription start site region 35361	752 bp upstream
Tssr35362	transcription start site region 35362	687 bp upstream
Tssr35363	transcription start site region 35363	628 bp upstream
Tssr35364	transcription start site region 35364	552 bp upstream
Tssr35365	transcription start site region 35365	531 bp upstream
Tssr35366	transcription start site region 35366	505 bp upstream
Tssr35367	transcription start site region 35367	486 bp upstream
Tssr35368	transcription start site region 35368	382 bp upstream
Tssr35369	transcription start site region 35369	316 bp upstream
Tssr35370	transcription start site region 35370	293 bp upstream
Tssr35371	transcription start site region 35371	194 bp downstream