rs238563523 SNP Detail

Summary

• ID
  rs238563523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82940392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGAGGT TTCGGCAGCC
  TGAATGACAA AGGGGAAGGA GAATTCTGGC TAGGCAATGA CTACCTCCAC TTACTCACTC
  TGAGGGGCTC AGTTCTCAGG GTTGAATTAG AGGACTGGGC TGGAAAAGAG GCTTATGCGG
  AGTACCACTT CCGGGTAGGC TCTGAGGCAG AGGGCTACGC GCTGCAGGTC TCCTCCTACC
  R
  GGGCACTGCT GGAGATGCTC TGGTGCAGGG CTCTGTGGAG GAGGGGACAG AATACACCTC
  ACACAGCAAC ATGCAGTTCA GTACCTTTGA CAGAGATGCC GACCAATGGG AAGAGAACTG
  TGCAGAGGTC TATGGGGGAG GCTGGTGGTA CAACAGCTGT CAGGCCGCCA ATCTCAATGG
  CATTTACTAC CCCGGGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676736	MGP_WTSI_3_82837007	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238563523					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676736	MGP_WTSI_3_82837007	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82940392 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fga	fibrinogen alpha chain			Coding-NonSynonymous
				mRNA-UTR
Rr375250	regulatory region 375250			1380 bp downstream
Tssr917	transcription start site region 917			1384 bp downstream
Tssr29678	transcription start site region 29678			1956 bp downstream
Tssr29679	transcription start site region 29679			1897 bp downstream
Tssr29680	transcription start site region 29680			1873 bp downstream
Tssr29681	transcription start site region 29681			1771 bp downstream
Tssr29682	transcription start site region 29682			1740 bp downstream
Tssr29683	transcription start site region 29683			1709 bp downstream
Tssr29684	transcription start site region 29684			1670 bp downstream
Tssr29685	transcription start site region 29685			1624 bp downstream
Tssr29686	transcription start site region 29686			1535 bp downstream
Tssr29687	transcription start site region 29687			1482 bp downstream
Tssr29688	transcription start site region 29688			1457 bp downstream
Tssr29689	transcription start site region 29689			1433 bp downstream
Tssr29690	transcription start site region 29690			1405 bp downstream
Tssr29691	transcription start site region 29691			1355 bp downstream
Tssr29692	transcription start site region 29692			1337 bp downstream
Tssr29693	transcription start site region 29693			1310 bp downstream
Tssr29694	transcription start site region 29694			1264 bp downstream
Tssr29695	transcription start site region 29695			1251 bp downstream
Tssr29696	transcription start site region 29696			1230 bp downstream
Tssr29697	transcription start site region 29697			1203 bp downstream
Tssr29698	transcription start site region 29698			1053 bp downstream
Tssr29699	transcription start site region 29699			996 bp downstream
Tssr29700	transcription start site region 29700			985 bp downstream
Tssr29701	transcription start site region 29701			953 bp downstream
Tssr33800	transcription start site region 33800			1962 bp upstream
Tssr33801	transcription start site region 33801			1599 bp upstream
Tssr33802	transcription start site region 33802			1475 bp upstream