rs238560577 SNP Detail

Summary

• ID
  rs238560577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101531415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGTGAC ACACCCTTCC
  CCCCACAGCA TTTACTCTCC TGGCCAAGCC CTTTGGGGAA GGATTCTCAT CTGGGTCCAC
  AGTGAGCGAT CAACACTCAG ATTTTTTTCC TTTTGAGTCC AGCAACCCAC TGGTTACAAT
  TTCCATTTTG CTATCTCGTG TGTAATTACT TCCTCTAGAT TGAAAACATT CACTCCTGGA
  R
  GGGTGCTCCC ATAGACCTAA GAAGAAAACA CAACTCACAA ATCTCAGAAA GTTCCTGAAA
  ATTTCAAGAT TCATGCTCCC CTACCCTCAA GACTATATAA GCAGTAACAA TTTCAGGAGG
  TTCTGTGTAA ATCTCCCTCA GGATGCTCAG GGAGGCAGCT TTCATGAGCT GTCACCCCTG
  TTGGGTAGGT TTTGGTGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321230911	CHEV_4_101346823	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238560577					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101531415 () rs orientation: forward

Symbol	Name	Function Class
Rr596196	regulatory region 596196	546 bp proximal
Rr596197	regulatory region 596197	1449 bp proximal