rs238556018 SNP Detail

Summary

• ID
  rs238556018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTACTAG GGTCCCTCAA
  GGAACCCTTT AAGAAATGTG ACACCTCCTT AAGCATTTAA AAACCCATTT CAGTCTGGAC
  CTTCACTAGG GCAGCAGGAG AATGGTCATA TTTGTGCTTC TTGGGACGCT GGCTCCCCTT
  GGACACCTTA AGCCTTGCAG GAGCTGAACC AGGCTAGAGA AGGGGTTGGC AGCGGTGGGC
  R
  GGAGGGGCCC CAGGCCGCTG GCCTGGGTGT GTGGGGGTCT TACCGCGGCT TGCTGGAAGG
  CGCCCTTGGT ATAGGTGCCA CCACCGCGGT AGGTGATGGC CGGGATCTCG CGGCTGAGTA
  GCGCGCACTT GTGTTGGTGC GCGCGGCTGG TGGAGATGTA ATCCACGCGC GCCACCACGT
  TGTTCTTGGA TGAGAAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361664226	MGP_WTSI_4_58218671	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	G	G	A	G	G	A	A	A	A	G	G	A	A	A	A	G	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238556018					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	G	G	A	G	G	A	A	A	A	G	G	A	A	A	A	G	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361664226	MGP_WTSI_4_58218671	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			within coordinates
Rr592872	regulatory region 592872			787 bp proximal
Rr592873	regulatory region 592873			843 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			524 bp downstream
Tssr41871	transcription start site region 41871			549 bp downstream
Tssr41872	transcription start site region 41872			705 bp downstream
Tssr41873	transcription start site region 41873			734 bp downstream
Tssr41874	transcription start site region 41874			759 bp downstream
Tssr41875	transcription start site region 41875			779 bp downstream
Tssr41876	transcription start site region 41876			800 bp downstream
Tssr41877	transcription start site region 41877			840 bp downstream
Tssr41878	transcription start site region 41878			871 bp downstream
Tssr41879	transcription start site region 41879			887 bp downstream
Tssr41880	transcription start site region 41880			969 bp downstream