rs238513959 SNP Detail

Summary

• ID
  rs238513959
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82939578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACCCGT TTCCTAACCT
  CCTTTAGTGT TTTGTTGGAA TCTCATTTTT TTTTTGGTCA ACTTTTCATG CTAGACTGTA
  CGTTCCTTGG GGGCAGGGAC TTGACCATGT GTCTATTTCT GTAATTCCCA AATGCCTAAC
  AGTGCAGTCA TTTCTCAATA AATACATTTT AAATAAATGA ACAAATTCTG CCGAAACTCA
  S
  TTCTGAGTCT GTTTAACCGA ATTCATTCAA AACGTGTGCG ATTGTAATAC CCAACCCCCT
  AACCTTAAAT TTAGTGTATG TTGCAGTTGA CATTTAGATC AGGTTAAAAA CTGTGTTCCA
  TTAGTATGGA CTGATGAATG CTTAGCTAGC TTTAAACTAT CATTTGAGAT TAGCATGGAC
  ACGTAAGATT TCAAATCCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676719	MGP_WTSI_3_82836193	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238513959					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676719	MGP_WTSI_3_82836193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82939578 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fga	fibrinogen alpha chain			Intron
				mRNA-UTR
Rr375250	regulatory region 375250			566 bp downstream
Tssr917	transcription start site region 917			570 bp downstream
Tssr29670	transcription start site region 29670			1975 bp downstream
Tssr29671	transcription start site region 29671			1426 bp downstream
Tssr29672	transcription start site region 29672			1333 bp downstream
Tssr29673	transcription start site region 29673			1286 bp downstream
Tssr29674	transcription start site region 29674			1252 bp downstream
Tssr29675	transcription start site region 29675			1246 bp downstream
Tssr29676	transcription start site region 29676			1232 bp downstream
Tssr29677	transcription start site region 29677			1217 bp downstream
Tssr29678	transcription start site region 29678			1142 bp downstream
Tssr29679	transcription start site region 29679			1083 bp downstream
Tssr29680	transcription start site region 29680			1059 bp downstream
Tssr29681	transcription start site region 29681			957 bp downstream
Tssr29682	transcription start site region 29682			926 bp downstream
Tssr29683	transcription start site region 29683			895 bp downstream
Tssr29684	transcription start site region 29684			856 bp downstream
Tssr29685	transcription start site region 29685			810 bp downstream
Tssr29686	transcription start site region 29686			721 bp downstream
Tssr29687	transcription start site region 29687			668 bp downstream
Tssr29688	transcription start site region 29688			643 bp downstream
Tssr29689	transcription start site region 29689			619 bp downstream
Tssr29690	transcription start site region 29690			591 bp downstream
Tssr29691	transcription start site region 29691			541 bp downstream
Tssr29692	transcription start site region 29692			523 bp downstream
Tssr29693	transcription start site region 29693			496 bp downstream
Tssr29694	transcription start site region 29694			450 bp downstream
Tssr29695	transcription start site region 29695			437 bp downstream
Tssr29696	transcription start site region 29696			416 bp downstream
Tssr29697	transcription start site region 29697			389 bp downstream
Tssr29698	transcription start site region 29698			239 bp downstream
Tssr29699	transcription start site region 29699			182 bp downstream
Tssr29700	transcription start site region 29700			171 bp downstream
Tssr29701	transcription start site region 29701			139 bp downstream
Tssr33800	transcription start site region 33800			1148 bp upstream
Tssr33801	transcription start site region 33801			785 bp upstream
Tssr33802	transcription start site region 33802			661 bp upstream