rs238509797 SNP Detail

Summary

• ID
  rs238509797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8731272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTAGCA GATCCCTAAA
  AAGAAGACAA AAGGCTTATC TGACACAAGT GCCTTTGGAG AACTTAAAAT ATGCACACAA
  ATATACATAC ATGTAAAATA CAAACGTAAA AAAAAAAGCA AAAGTCACGT ATATCCACAA
  AATCTGTGGG AATTTGTGTA AGAACATCCA ACGACTTGGC ACAAATGAGG TTAGAAGCAC
  R
  GAGGGGAGGG AATCAGAAGG TGCCGATGGC TACACTCAGC GCTCTCATAC TTCCATTACC
  TGCTTCTCAA AGGCACTGGG TACCAGCCTT CTCAGCTCAG ACAAACTGTT ATTGATTCGG
  TCTCGTCGGC GCTTCTCGAT GATCTATGGG AAGCAGACAA AAACAAAGGA GGGCATTTAC
  GTTATGACTG TACATTCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356905121	MGP_WTSI_3_8666212	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238509797					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356905121	MGP_WTSI_3_8666212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8731272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	1091 bp distal
Cpgi12962	CpG island 12962	303 bp proximal
Gm64520	predicted gene, 64520	319 bp upstream
Hey1	hairy/enhancer-of-split related with YRPW motif 1	Intron
Rr573305	regulatory region 573305	1503 bp distal
Rr573306	regulatory region 573306	within coordinates
Rr573307	regulatory region 573307	932 bp proximal
Rr573308	regulatory region 573308	1034 bp proximal
Tssr32550	transcription start site region 32550	413 bp upstream
Tssr32551	transcription start site region 32551	621 bp downstream
Tssr32552	transcription start site region 32552	751 bp downstream
Tssr32553	transcription start site region 32553	785 bp downstream
Tssr32554	transcription start site region 32554	821 bp downstream
Tssr32555	transcription start site region 32555	837 bp downstream
Tssr32556	transcription start site region 32556	1065 bp downstream