rs238497347 SNP Detail

Summary

• ID
  rs238497347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:45082737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACCACC ACTGCTGCCA
  CCATTATCAC CACCACCAAT GGGATGGGCC AAAAAAGGAT TCTACATTCT CCCATGTCTA
  TCTTTATTTC ATTGGCTCTC ATTCCCATCC CATCCCTCTT CACACTGTCA CTTGTTGAAG
  AGCAGGAGGA AAGGAGGAAA TAAGAAAAGG GAGAATATGT CTGCACTGCA ACTGGAAAAA
  R
  AAAAAAAAAA AAAAACGAAA CAAGCCAGAA CGACAGACGA GTGACTGGTG GTTGGCCACA
  CAGCTCAATA GCTACCGGTG CCATCATGTA AACGTAATTC CCCTGATAAC CATGGAAACC
  AAAATGAAGG CACCGTGTTG AGGGCTGCTC TCTTTAGATA TCTAAAAACA ATAAGAGGCC
  AGAGACCAGA GAGACAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss361358241	MGP_WTSI_4_45095609	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs238497347					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361358241	MGP_WTSI_4_45095609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45082737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14228	CpG island 14228	1322 bp proximal
Fbxo10	F-box protein 10	Intron
Rr591309	regulatory region 591309	1114 bp distal
Rr591310	regulatory region 591310	32 bp proximal
Rr591311	regulatory region 591311	1857 bp proximal
Tssr41529	transcription start site region 41529	1801 bp downstream