rs238490885 SNP Detail

Summary

• ID
  rs238490885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121756706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTTTTT TCCTCAGTTC AGCAAAAGGG TTTATTTTGT
  TTGTTTTTGG AGACAGGGTT TCTCTGCATA GCCTTGCTGT CCTGGAACTC ACTCTGTAGA
  Y
  CAGGCTGGCC TGGAACTCAG AAACCCGCCT ACCTCTGCCT TCTAAGTGCT GGGATTAAAG
  GCATGTGCCA CCACTGCCTG ACTTCAGCAA GAGTTCTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320907354	CHEV_3_121665975	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238490885					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121756706 () rs orientation: forward

Symbol	Name	Function Class
Arhgap29	Rho GTPase activating protein 29	Intron
Rr584209	regulatory region 584209	950 bp proximal
Rr584210	regulatory region 584210	1186 bp proximal
Rr584211	regulatory region 584211	1295 bp proximal