rs238485887 SNP Detail

Summary

• ID
  rs238485887
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135473215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGGAG AGCCAACCTT
  GGCCGAAAGC ACGAGACATG CCCTGCCCTC GTGAGGGACC CAAGCACCAG AATAGAACCT
  GGCAGGCAGG GGGATGGGAA CAGAAAGCAC TCTGTGGGTG CCAAGCTGGG GCGCTTCTAA
  TGCGATCTTT GACCTTCACC CTGACCTCGT TAGATATGTG TCACCTGTCC CCAGGCAGCC
  S
  GACCCCACCC TGTTTCTGGA TGGCAGACAG GCCACTCCTC ACCCACCCTC CACACAAAGG
  GACTGGGACC TTGACCCACG AGAGCTGGCC TGAACTGTCA CACAGGTTTT GTTTGGGTTT
  AGATTTTTTT TGTCGTTGTT GTTTTAAGAC AGGCTTTCCC TTTGTAGCCC AGGCTAGCCT
  CCAGCTTCTG ATCCTCCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353035	CHEV_4_135301819	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238485887					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135473215 () rs orientation: forward

Symbol	Name	Function Class
Il22ra1	interleukin 22 receptor, alpha 1	Intron
Rr602126	regulatory region 602126	643 bp distal
Rr602127	regulatory region 602127	within coordinates