rs238485615 SNP Detail

Summary

• ID
  rs238485615
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118580663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACTTAGA TGTGCCAGAT
  ATTCAAATAT TGGTGAATAA AGCAGGCTTT CAGATTAGAT GTGGCTCAGG AGTTCCTATT
  CCACACCTTC TGATGAGAAA CTTCTCCAGG AAAATTCCTT TCTAGAAACA GGATCCCCCT
  GTTCTCTGAG AGCTGGCCAT CTTTTGAGCT GCTGTGTCCT AGAAGGATGG CATGGCATGG
  M
  CTGGGCTCAG GAAGGAGGCA GAGGATCAGG AGATAGCTGG TTAGGGAGAG TGGGCACTCC
  TCAGAGAGAT AAGGCAAAAC CCTGAGACTT AGTGCACGGT TGCCCCCGAC TGAACTTCAC
  AAAGGACACC AGTCATGGCA CTTACCCTGA AGATGTCATC TTCGGAGGCA GCAGACACCG
  CCTCCTTCAT AGCCTTGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321925459	CHEV_6_118553720	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238485615					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118580663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Gm38887	predicted gene, 38887			within coordinates
Rr637495	regulatory region 637495			1377 bp distal