rs238484741 SNP Detail

Summary

• ID
  rs238484741
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113579578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATGGCAAG AGCATGTGTA GGGAGAAAGA
  AGTCACACAG GGAACAAAAG CAGAAAggct gggctgggct gggctgggTT CAGGCTTTTG
  GAACCTCTGG TTCTGGAAAA CCAACTCCAG GAGCTGACAT TCTGTTCTCA AGGTGCTACC
  M
  CCAAAGAGAT GCATAAGTTA AAAATGTAAA AATTTTATAC CTTGGTACTG AGTGgttgtg
  gggcatgcct ttaatctcag cactctagaa gcagaggcag gtagatctct gagttggagg
  ccagcctgac ctacaaagat aaagtgccaC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911090	CHEV_6_113552611	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238484741					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113579578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17850	CpG island 17850	1758 bp proximal
Fancd2os	Fancd2 opposite strand	1902 bp upstream
Gm67049	predicted gene, 67049	within coordinates
Gm67050	predicted gene, 67050	1637 bp downstream
Rr379958	regulatory region 379958	1238 bp downstream
Rr636546	regulatory region 636546	1913 bp distal
Rr636547	regulatory region 636547	1891 bp distal
Rr636548	regulatory region 636548	1537 bp distal
Rr636549	regulatory region 636549	1665 bp proximal
Rr636550	regulatory region 636550	1889 bp proximal
Tssr58229	transcription start site region 58229	1853 bp downstream
Tssr62459	transcription start site region 62459	1974 bp upstream
Tssr62460	transcription start site region 62460	1964 bp upstream