rs238467331 SNP Detail

Summary

• ID
  rs238467331
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107838422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGAAAG TGAGGTGAGG
  CCCTCAAGGC TTGGTTGCCA TCCACCCCTC TCAGTTGTTC TTCCACAGTC TTTTAACCCT
  TGAGCCTCCT TTGTCCAGGA TCTGCTCCAA TCTAGCCCTC AGCCCAGGAG ACTGCAGCCT
  GCCCTTAGCC ATCTACGGCT ATGGGAATCA CAGGGAGGGA GGGGTGCATG AAACTGGGAT
  C
  CTCCAGGGTT CCAGGAAAAA GCATGACTTT TGGGGTCACT CTCTAGATGT GTGTGCGCCA
  CTTCTCAAGA GTTATTTATT TCAGGTGAGG GGTGAAGTGC ATGCCAATGA GAATGTGGAG
  AGGTCAGAGG ACATTGTAGG ATTTAGTTCC CTCCTTTCAA CACGTAGCTT CCAGGGAAAG
  GACTAAGGTT ACGGGTTTGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251890	CHEV_4_107653830	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238467331					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107838422 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597103	regulatory region 597103			1080 bp distal
Slc1a7	solute carrier family 1 (glutamate transporter), member 7			Intron
				Noncoding-Transcript-Variant
Tssr1254	transcription start site region 1254			462 bp upstream