rs238466733 SNP Detail

Summary

• ID
  rs238466733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20561939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagcatctt ctgggtatat gcccaggagt
  ggcattgctg gatcctcaga tagtactatg tccaatattc tgaggaacct ccaaactgat
  ttccagagtg gttgtaccaa cttgtaatcc caccaactat ggaggagtgt ccctctttct
  Y
  cacaaccttg tcagtatctg ctgtcacctg agtttttgat cttagccatt ctgactggtg
  tgaggtggaa tctcagggtt gttttgagtt gcatttccct gatgactaag gatgttgaaa
  gttttcttta ggtgtttctc agccattcag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320680602	CHEV_3_20406697	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238466733					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20561939 () rs orientation: forward

Symbol	Name	Function Class
Gm31466	predicted gene, 31466	1569 bp upstream
Rr574081	regulatory region 574081	1484 bp proximal
Rr574082	regulatory region 574082	1613 bp proximal
Tssr32748	transcription start site region 32748	1565 bp upstream
Tssr32749	transcription start site region 32749	1550 bp upstream