rs238460182 SNP Detail

Summary

• ID
  rs238460182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58431677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTATTAT CTCGTGGTAC
  TGGGGATGGG ACCCGGGGAG GGCCTGATGC ATGATAGGTA AATACGCTGC AGCTGAGCTT
  CACATCGAAC TCAAATTATT TCCTTAATTG CAGCTCCTTG ACTTTTACCT ATAAGATGTA
  CAAGAGATAT TCCAGATGTG AAATTATTTT AGCAATAACT TGAAAGCACC AAAACAAACA
  Y
  GTTTTTCCTA CTATTAATTT ATTTCCAACA TATCCTTAAA GGCCTGGTTT CCTAACACAT
  GCACATTTCT TCATTCTCAC ACAGCTGAAA TTCAATAATC TTTTTGTGTT ACATAAACTG
  GTTGGCTCTT GGCCACATAT CAAGAAAGCT TCCGGTTGTT AAGTTTAGAA AAAAGGCAAA
  GTGAAATGTT AAATGAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358099837	MGP_WTSI_3_58328178	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238460182					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358099837	MGP_WTSI_3_58328178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58431677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13201	CpG island 13201	796 bp proximal
Eif2a	eukaryotic translation initiation factor 2A	1575 bp upstream
Rr397681	regulatory region 397681	1497 bp upstream
Rr577247	regulatory region 577247	1075 bp proximal
Rr577248	regulatory region 577248	1330 bp proximal
Rr577249	regulatory region 577249	1626 bp proximal
Serp1	stress-associated endoplasmic reticulum protein 1	Intron
Tssr886	transcription start site region 886	1476 bp downstream
Tssr29207	transcription start site region 29207	857 bp upstream
Tssr29208	transcription start site region 29208	1559 bp upstream
Tssr29209	transcription start site region 29209	1752 bp upstream
Tssr29210	transcription start site region 29210	1777 bp upstream
Tssr33348	transcription start site region 33348	1827 bp upstream
Tssr33349	transcription start site region 33349	857 bp downstream
Tssr33350	transcription start site region 33350	1461 bp downstream
Tssr33351	transcription start site region 33351	1486 bp downstream
Tssr33352	transcription start site region 33352	1512 bp downstream
Tssr33353	transcription start site region 33353	1611 bp downstream
Tssr33354	transcription start site region 33354	1637 bp downstream