rs238453906 SNP Detail

Summary

• ID
  rs238453906
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81822126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTGATTT TCAATATTTA TATCCCAACT
  TTTTATATAT GCTCCATATA TCTTAATTGA TGCATTATTT TTGTTAGTGG CTATTAATTT
  TATGAAATAA TAGGTTTCAT TGTAATattt catacatgtg taaaatgtac tttcatcata
  W
  ttagtcccca ttaccctgtt caaTAGTCAA GAGCATTTGA ATATGGCCTC TAAACAGAAG
  CTCTACAACC TTGGGTAGCT GAGGGGTAAT GATGCTGTGA AGAGCAAGCC TTGAGATGGC
  CAATGTGGTT TAAGCTAACT GCAAGGCCAC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322288138	CHEV_7_89317264	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238453906					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81822126 () rs orientation: forward

Symbol	Name	Function Class
Gm45089	predicted gene 45089	287 bp downstream
Gm73333	predicted gene, 73333	within coordinates
Rr650249	regulatory region 650249	1928 bp proximal
Tssr67529	transcription start site region 67529	1420 bp upstream