rs238447340 SNP Detail

Summary

• ID
  rs238447340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32421282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GTCTTGGAGT CTTCCGTTTA TATTTTATAG TTTTATGTGT ATTTGCATGT
  Y
  GGAATAAAAT CTAAAAGCTG AAAGTAGGGG CCTTACCCGC TAGCTCATAC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320697917	CHEV_3_32266055	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238447340					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32421282 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	within coordinates
Rr374783	regulatory region 374783	1197 bp downstream
Rr574946	regulatory region 574946	1466 bp distal
Rr574947	regulatory region 574947	1644 bp distal
Rr574948	regulatory region 574948	965 bp distal
Rr574949	regulatory region 574949	1443 bp distal
Tssr28744	transcription start site region 28744	1807 bp downstream
Tssr28745	transcription start site region 28745	1780 bp downstream
Tssr32923	transcription start site region 32923	1978 bp upstream
Tssr32924	transcription start site region 32924	1915 bp upstream
Tssr32925	transcription start site region 32925	1707 bp upstream
Tssr32926	transcription start site region 32926	1511 bp upstream
Tssr32927	transcription start site region 32927	1442 bp upstream
Tssr32928	transcription start site region 32928	1220 bp upstream
Zmat3	zinc finger matrin type 3	1468 bp upstream