rs238422493 SNP Detail

Summary

• ID
  rs238422493
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109505971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACGCCAA AGAACAGCAG
  CTATTCAGGC CAGGGGAATC GGGTTTACCC ACTGCAAGTT TAATTGGAAT CATTTGAGAT
  TTAACACAGC AGTGGGGAAC TGCGTGGAAC AAACTTGGAA CTGGAGGGGG TTGTTATACT
  GGCTGTTCAA AGCTGATGCT TGTCTGACAA CCGTCTTGTA TTCCATCCTT TGCTTTACTG
  W
  ATGGTGTGTG AGCATATTGT ATGATTTATA TGTGGGCATA TAATTGACAT CCGCAAGGGG
  GTTAATTTCA ATCTAAAAAC AATAATGTTA TTAGTTTGGG GCTGGGGTGG AGAGGGTAAG
  AGTGGGTTAG AGACTAAGAG TTTAGGTGAG GATAGTGGTG GAGTTGGGGG CGAGAGGAAT
  AAGTCAGAAG TGTCTATCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355226210	MGP_WTSI_2_109515783	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238422493					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355226210	MGP_WTSI_2_109515783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109505971 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron
Cpgi12032	CpG island 12032	1158 bp distal
Cpgi12033	CpG island 12033	393 bp proximal
Cpgi12034	CpG island 12034	1516 bp proximal
Gm20638	predicted gene 20638	1533 bp downstream
Gm45346	predicted gene 45346	within coordinates
Rr373669	regulatory region 373669	1437 bp upstream
Rr562477	regulatory region 562477	916 bp distal
Rr562478	regulatory region 562478	623 bp distal
Rr562479	regulatory region 562479	522 bp distal
Rr562480	regulatory region 562480	within coordinates
Rr562481	regulatory region 562481	916 bp proximal
Rr562482	regulatory region 562482	1417 bp proximal