rs238422345 SNP Detail

Summary

• ID
  rs238422345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85430884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTATATA GGCTTCCTGG
  TGCGGCTGCT GCGAGACCAA ACGGCTGTGC TGACCTCCGG CCCCAGCGCT CCCGGGTCCC
  GCAAGCCACC TGCGCGCAGG GGCGTGGAGG GCAGCGCACG CTTCGGGGCC GGGCACAGAG
  TAGAGGCTGC ACGCTCACAG CCCGTGCTTC CTGGGGACTG TGATGGCGAC CCCAATGGGT
  Y
  AGTGAGACCC ATCAAGTTGG AGCAGACGTC CCTGAGTCCT GAGGTGCGGT GACCCAAGGC
  AGAGGCGCCT CACCTGCTGT TCAGTGAACT CCCTGTAAAA GGATCTCAGG TCGCCCAGAT
  GAGGAAACGC CCTGTAGCTC TGGAAGGGTG ACCGGCGACG CCAGGGATCC CCAGACTTTT
  AAGAAAAATC TCCCACAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404549	MGP_WTSI_8_87228154	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238422345					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404549	MGP_WTSI_8_87228154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85430884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			Coding-NonSynonymous
Nfix	nuclear factor I/X			Intron
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			262 bp upstream
Rr666586	regulatory region 666586			771 bp distal
Rr666587	regulatory region 666587			397 bp distal
Rr666588	regulatory region 666588			331 bp proximal
Tssr78439	transcription start site region 78439			840 bp downstream
Tssr82117	transcription start site region 82117			871 bp downstream
Tssr82118	transcription start site region 82118			907 bp downstream
Tssr82119	transcription start site region 82119			935 bp downstream
Tssr82120	transcription start site region 82120			1012 bp downstream
Tssr82121	transcription start site region 82121			1559 bp downstream
Tssr82122	transcription start site region 82122			1794 bp downstream
Tssr82123	transcription start site region 82123			1943 bp downstream
Tssr82124	transcription start site region 82124			1972 bp downstream