rs238419365 SNP Detail

Summary

• ID
  rs238419365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87702682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCGTCCG TGCGCTCCTA
  GCTGCCGCCG CCCGGCCTCG CGCGACACGT GCGCGGGGCG GTGTTAAAGA CTAGCCACCA
  GGAGAGGGCG GCACCCACGG CCCCGCCCCG CCCCGCCTGC CAATGCCCCC AGTGCCCCCT
  CCCCTTTTGA GGCCCTAATG CCAGCTCGCC TTCCTAATGT CCCTCGCGGC TGCAGGAGAC
  Y
  TGGGGCGGGG GGCTGCCATA GATTGCCTCA CAAGTGTCTT CTGAGGCTGG GGGAGCTAGG
  AAGCTGATAC CTTATTTCTC ACAGTAAAAC AGCTGCATTT TCAGATTTGC GGGGAAGTGG
  AGAAATTGAG CAAGGGAAGG GTTGAAGTCC AGGTCATCCC AGCCAGCCTC ACGGTGCACT
  TTACTTAAGA GGGTGTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358784058	MGP_WTSI_3_87599297	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238419365					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358784058	MGP_WTSI_3_87599297	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87702682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13339	CpG island 13339	within coordinates
Cpgi13340	CpG island 13340	1436 bp proximal
Insrr	insulin receptor-related receptor	1576 bp upstream
Ntrk1	neurotrophic tyrosine kinase, receptor, type 1	213 bp upstream
Rr579548	regulatory region 579548	within coordinates
Rr579549	regulatory region 579549	106 bp distal
Rr579550	regulatory region 579550	366 bp proximal
Rr579551	regulatory region 579551	1086 bp proximal
Tssr29830	transcription start site region 29830	1514 bp upstream
Tssr29831	transcription start site region 29831	1563 bp upstream
Tssr33956	transcription start site region 33956	153 bp upstream