rs238396289 SNP Detail

Summary

• ID
  rs238396289
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67421016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATCACTT CAACACTGGC
  CTGCTTGATC GTCTTTAAGG GTGGAGTTTT AGTAACCTTT GAAGGAAAAC AATTTCACTG
  GATTTGTGGA AGAACTTGAT TCCTGGCACA CTGGCCTCTT TTCCTTGGCT CCTGCAGTCA
  CATAAGTGTT AAATTATCAG CGAGGTTAAG GGGAAATGTA ACATTGTTTC TCATAGCCTT
  S
  AGTTCCAAGT TTATCTGTGT TCACGCGCAT ACACCACCAT TTGGGATGAG CTAGGGTCAC
  CTTGAAGTGA CCACTACAGA TGCTGAACAG CACCCAAGCT CCTGCTGACA CGAAAGGAGT
  GAGCTCTCCT TCAGATGTTG AGAGCTAGCT GCTTTTGTAA GGATGCCAAG GGGTAGCTGA
  AAAAGCCCAG AAATGCTAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358277046	MGP_WTSI_3_67317605	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238396289					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358277046	MGP_WTSI_3_67317605	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67421016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13247	CpG island 13247	1018 bp proximal
Gm40067	predicted gene, 40067	1566 bp upstream
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	Intron
Rr577934	regulatory region 577934	434 bp distal
Rr577935	regulatory region 577935	659 bp distal
Rr577936	regulatory region 577936	1830 bp proximal
Rr577937	regulatory region 577937	1869 bp proximal
Rr577938	regulatory region 577938	1967 bp proximal
Tssr33502	transcription start site region 33502	1785 bp downstream
Tssr33503	transcription start site region 33503	1804 bp downstream
Tssr33504	transcription start site region 33504	1943 bp downstream
Tssr33505	transcription start site region 33505	1980 bp downstream