rs238394799 SNP Detail

Summary

• ID
  rs238394799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58279865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTACAGA TGGCGCCAAC
  TACACAAGTG GTCAGCCCAA TGCACATATA CATACAAGTA ACACTAAAAG AACTCAGGAA
  AATATACATG CTTATAATAA TTATATATGA ATAATATATA ATAAAGTAAT ATAATGGTTA
  AAAATTAACA TGCATGATTA ATTTATTATT ATTTATCATC AATTAAATGA ATTACAATTA
  Y
  TAATTATGTA TTATCAATAC TATATTAGTG TATTGATATA TATTATATAG TATATCATTT
  ATGTATAACT AATAATTAAA GAAGATGTGA TGTTTTGAGA GGAAATTTAG GAGATGTGAG
  AGGATTTGGA GGCAGAGGGA GAAATAGGAA TGATGTATGA AATTTTCAAA TAATTAAATT
  AAAAATAAAA TTATTCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321137478	CHEV_4_58292737	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238394799					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58279865 () rs orientation: forward

Symbol	Name	Function Class
Rr592884	regulatory region 592884	1126 bp distal