rs238361965 SNP Detail

Summary

• ID
  rs238361965
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80942801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGGATT TCACAGGAGA
  ACAGCATCTT TCTTTATTTG GTCCCGGGGA CTTCCTGGAT GCCAAGCAGG AGTTATAATG
  AACAACCTGT CAAGTACTCA TTTGAAGGAA GAGAGAAGAG GACAGAGACC TGGCTAGAAC
  AGGGTTGTTT GGTAGGCCCC AGTGGTGTCC AAGAACAAAG GAAAAGATTA ACATTTTATC
  K
  TTTGGACTGG TCCCATCTTT TATTTCTGTC TCCAGGTCAT GCCCGGTTTC AGGATTATGT
  TTACCTTGGT TCTATGGTTG GATTGCATGC CCTGACTGAT TCAACTAAGT ACTTGGTGAT
  ACATCTGTCT GACTGCACAC CAAGGCATTT GCTTGCTCTA ATGTTATTTT TATTTTCCTT
  ATTTTCATTT TCTTTTTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358623162	MGP_WTSI_3_80839416	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238361965					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358623162	MGP_WTSI_3_80839416	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80942801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13283	CpG island 13283	738 bp proximal
Gm16000	predicted gene 16000	within coordinates
Gm42476	predicted gene 42476	1720 bp downstream
Pdgfc	platelet-derived growth factor, C polypeptide	922 bp upstream
Rr375235	regulatory region 375235	within coordinates
Rr578681	regulatory region 578681	605 bp distal
Rr578682	regulatory region 578682	432 bp proximal
Rr578683	regulatory region 578683	933 bp proximal
Rr578684	regulatory region 578684	945 bp proximal
Rr578685	regulatory region 578685	1001 bp proximal
Rr578686	regulatory region 578686	1453 bp proximal
Rr578687	regulatory region 578687	1616 bp proximal
Tssr29617	transcription start site region 29617	866 bp upstream
Tssr29618	transcription start site region 29618	1144 bp upstream
Tssr29619	transcription start site region 29619	1471 bp upstream
Tssr29620	transcription start site region 29620	1571 bp upstream
Tssr29621	transcription start site region 29621	1643 bp upstream
Tssr29622	transcription start site region 29622	1718 bp upstream
Tssr29623	transcription start site region 29623	1885 bp upstream