rs238353798 SNP Detail

Summary

• ID
  rs238353798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132614525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGCACA TACTGTGTGT
  GAATCCTTAG GTCACTGATT CATAAACACT TCACAGTAAG GAAGCATCCC CATTTTTATC
  TTTAAACATT TTTGGTCTGG TTTACTTTTT TATTTGTTTT TCCAAACAGG GTTTCTCTGT
  GTAACCCTGG CTGTCCTGGA ACTTACTCTG TAGACCAAGC TGGCCTCGAA CTCAAAGATC
  Y
  ACCTACCTCT TTGCTCTGCC TCCCAAGTGC CAGGATTAAA AGTAATGGCA TTTTGGCTGG
  ACAGTGGTGG CGCACAACTT TAATCCCAGC ACTTGAAAGA CAGAGACAGG CAGAGCTCTG
  TGATTCAAGA CTACATAGCA AGTTCTGGGC CAGCCAGGAA TACACAGTGA GACCCTGTCT
  CAAACCAAAA CAAAGAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321337145	CHEV_4_132443129	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238353798					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132614525 () rs orientation: forward

Symbol	Name	Function Class
Gm13033	predicted gene 13033	798 bp downstream
Gm70413	predicted gene, 70413	998 bp downstream
Rr601103	regulatory region 601103	1901 bp distal
Rr601104	regulatory region 601104	446 bp proximal
Rr601105	regulatory region 601105	630 bp proximal
Rr601106	regulatory region 601106	740 bp proximal