rs238341260 SNP Detail

Summary

• ID
  rs238341260
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121405156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCGGGGAA CTCTCAGAAG
  CAACTAATGG GGAACTTGCC AAGAGATTGC TGGCAGGAGG AATGTCAGAC CTGTGCTAAG
  AGGGGCTCCG GCTCTGAGGG GGCTCTGGCT CTGAGGGGCT CTGGTTCTGA GGAGCTCTGG
  TTCTGAGGGG GCTCTGGCTC TGAGGGGCTC TGAGGGGGCT CCGACTCTGA GGGGCTCCGG
  M
  TCTGAGGGGG CTCCGGCTCT GAGGGGGCTC CGGCTCTGAG GGGACTCCGG CTCTGAGGAG
  GCTCCGGCTC TGAGAGGGCT CTGGCTCTGA GGGGCTCTGG CTCTGAGGAG CTCTGGTTCT
  GAGGGGGCTC TGGCTCTGAG GGGCTCTGAG GGGGCTCCGA CTCTGAGGGG CTCCGGCTCT
  GAGGGGGCTC CGGCTCTGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	SPRET/EiJ
ss355468806	MGP_WTSI_2_121400411	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	SPRET/EiJ
rs238341260					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355468806	MGP_WTSI_2_121400411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121405156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr373770	regulatory region 373770			1357 bp upstream
Rr563854	regulatory region 563854			84 bp distal
Rr563855	regulatory region 563855			1085 bp proximal