rs238315765 SNP Detail

Summary

• ID
  rs238315765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121996560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAAGGTT TAGGACTGCC
  TCTGAAAGGA AATCTGCTAA CAAGAGGCCT CTGAGAAGTG GTCTTGAACT ATTCTTTTTA
  GATCTTTTAT ATTCCAAATA TAAATGTAAT AGGTATGCAA TAGGTATGCA GTGAAGGTTG
  CTGGTTGGGA GAGCTTTGAC ACTGGATCCT CTGAAGGGGA TTCTGTATTC TGGAGGATGG
  R
  CTCTGCTGAA GCACAGAGTC TGGAGCGGAT GGAGCGGTCT GGGCTGCGGG AGCTCCTAGC
  AGGACAGAAC CTACACTTGT TAACACACGT CCAGGGGATG TTTGGGTGCA GGCCACAGTG
  CTGTTTACCC TGAAATACCA ATTCTACCAT GCTAGAGAGC CGAACCCACT TGGATTAATG
  TAGTCTAGGT TCTTGCCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320909561	CHEV_3_121905829	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238315765					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121996560 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	935 bp proximal
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	131 bp distal
Rr584258	regulatory region 584258	713 bp proximal