rs238285212 SNP Detail

Summary

• ID
  rs238285212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141294043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCGGTTG CAGATCTAAT
  CAGTAGCAAT GAGGGAGGTG GGAGAGGGGA CGGAGAAAGA AAGCATCTCT AAGAGAAAAA
  CAGAGAGCAA GACCCTAATT GAAATGGGAA CAATTCTCAT TTTAGAAAAT GTTTTCTTAA
  CAGATTGTTC TGGCCTCCTG CCTCAAAGTT TCTGATTAAA TTAATGATAG GCATTGCTGC
  Y
  GTTACTGTTT CCAGGGGGAA ATTTTCTACA GATCTTCTCA TTTCTTTTCT TCCCCAATTC
  TCAGGTATCA CAATCGAATT GCTAATTGAG GGCAGAACAA GCCAAGGAGA TGAACTTAGC
  ACTGCTATGC AAATGCAGAC TATCCAGGAA ATTAATATTT CATGTGTGCC TACCTCAACA
  AGTAATGTTC CATTACAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320993568	CHEV_3_141251246	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238285212					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141294043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			1150 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant