rs238196644 SNP Detail

Summary

• ID
  rs238196644
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGCCCTC CGAAGCCACG
  TCCCACTGGA TCCCTTTCAC GCCACTTATT TTCAGTCGTG AGATTCCCCC ACTAGAATGG
  TTGCAGTGAG AACCAGAAAT TTTCATTAAA CTCTCCCCCG CCCTCCCGGC CCCCAGTTCT
  GAGCCGATCA CTGGGGAGCA CAGCCAGGGC CTGGCCCGGC CTCGCTTGCT TCCGAAGGCT
  K
  TAATTTGCAC ACTCGCCTCC GGGTGGTTCT CCAGCCAGGA GGCTCGCAGG TCCACGCCCC
  TTGGCACCGG AGCCTCCTCC CTGGCTTCCC CGCGGGCGGC GCCTTCCGCC CTCCGCCATT
  GTGTCCATCC CCTGCCCGCA GAGCGCCGCT TGCCCGGGCC GCTGTAGTCA GTTACCTGCT
  CCGCCGGGCG AACACGTGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
ss379694003	MGP_WTSI_10_21878272	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
rs238196644					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379694003	MGP_WTSI_10_21878272	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	within coordinates
Cpgi1374	CpG island 1374	721 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	143 bp upstream
Raet1e	retinoic acid early transcript 1E	76 bp upstream
Rr384270	regulatory region 384270	867 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	131 bp proximal
Tssr92677	transcription start site region 92677	61 bp downstream
Tssr92678	transcription start site region 92678	3 bp upstream
Tssr92679	transcription start site region 92679	55 bp upstream
Tssr92680	transcription start site region 92680	100 bp upstream