rs238181354 SNP Detail

Summary

• ID
  rs238181354
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9095646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gggcatgtc tgtattacag ccagaGTGGT
  GGCCATATTG CAGGAAtctc tctctctctc tctctctctc tctctctctc tctctctctc
  tctcCACCTC CACCTCTCCC TATCCTCCTC ATCTATCTAT CTATATATTT GGGCATATAT
  M
  TATATAAGTT TACTACTGAG GCATCATTAA TATTGTGGCC CTAGTCACAA ATTGCTGTTG
  GAGAGCAAGA TCTGTTATTT TTTTTTCCTT ACAACTCTTT TCCTCATTAG AATAATTATT
  TTTCCTATTT AAAAAGAAAA GTATGTTTAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321738842	CHEV_6_9045646	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238181354					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9095646 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626465	regulatory region 626465	1717 bp proximal
Tssr54933	transcription start site region 54933	743 bp upstream