rs238179072 SNP Detail

Summary

• ID
  rs238179072
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165343355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGGGTT ATTCCCACCA
  CTTATTTTGG CCCAGAACTC TCTGCTTCCT GTCTGTCATG ACATGAGGTG TCTGTGACAG
  ATTTTTGCCA GTATGAACTG CACCGTGTCT CTCCTGCTGT GATGAACTGA AGTCCCCCTG
  AAACCATGAG CCAACCTAAC CCTTCACTCC CATAAGTCAA TGCTCTTGGT TATTTTTGGC
  W
  GAGAATTGCA AAAGAGTCTC AGGCAAGTGT GCCGTCTCCC TTGGCCTCAA TTTTTTTTTA
  TTAGATATTT TCCTCATTTA CAATGGCCTC GATTTTCTTG TCCCCCAACA TGGAGTTAGA
  TTGTGGCGAT TCCTACCTCC TTAGGCTCCG GTGGGGTTAA TGAGGAGGTA AAACACTAAC
  GATATTAGGT AATTATCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608176	CHEV_2_165326935	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238179072					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165343355 () rs orientation: forward

Symbol	Name	Function Class
Rr569936	regulatory region 569936	1862 bp proximal