rs238172776 SNP Detail

Summary

• ID
  rs238172776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151271638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTAGTAC AGCTCTCATT
  CACGGTTTGC TTCTGTGCCT GGGGCATTCT GGGAAGAGCC TGATTTCACC CTGCCAAAGT
  CTAGCAGCTT CAGGTCCACG TGAATCGTGA ATCGCAAACA CCGGAGAGCA ATCAGAAATG
  CCCAACAGCC CTGCCGCATG AAACCAAGAA GTTACAGAGG AAAGGTCGGG ACGAGGAAAA
  R
  GCTTTACTCT TTCCCATGTG TTTGCATTTG CTTCAAAAAG ATTTCTCTTC TTGGAAGCTA
  AAAACCCAGA GCAACCTTTG CTACCAAGGG AACAGCTGCG GTAGCTCTTT GAGGATGGCC
  CCGTTCCAGA ACTCAGGTCT GACAATCCAA GAAACCTCTC TAGCTTTTGG CTCTGAACTG
  ATCATCACAC GAAACTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321026068	CHEV_3_151228965	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238172776					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151271638 () rs orientation: forward

Symbol	Name	Function Class
Rr587404	regulatory region 587404	within coordinates
Rr587405	regulatory region 587405	607 bp proximal
Rr587406	regulatory region 587406	856 bp proximal