rs238162337 SNP Detail

Summary

• ID
  rs238162337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113051743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gggcatcag atcccattac agatggttgt
  gagccaccat gtggttgctg ggaattgaac tcaggacttc tggaagagca gtctgtgctc
  ttgaactccg agccacctct ccagccccTG GATAGTATTA TTATAGAGCA CAAGCACACA
  Y
  AACACAACAA CCTAAAAACC AAGCTTCACA AATACATTTG TTGCTTAATC ATTTTACTTG
  TGTTTGGCTA CAAGTCAAGC AAAATTATAG GTCCTGAAGA AGCTTGGCAA AATCACATTT
  AGACCAGCAA TAACGTGTAG AATGCCATGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321909776	CHEV_6_113024776	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238162337					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113051743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	1279 bp proximal
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	611 bp upstream
Rr407325	regulatory region 407325	1035 bp proximal
Rr636448	regulatory region 636448	140 bp distal
Rr636449	regulatory region 636449	397 bp proximal
Rr636450	regulatory region 636450	1606 bp proximal
Tssr62428	transcription start site region 62428	1535 bp downstream