rs238102844 SNP Detail

Summary

• ID
  rs238102844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38540110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTAGGAT TACAAGGCAT
  GGATCATGCC TGCTGAAAGA CTACTATAAG CTATAACTGT CATTAATCTT CAGGCCCATT
  TGAATATTAA TTTTTCATTT ATAGATAGCT CACAATTCAC CTGTCATTTT GTTTCTCCTA
  ATAGAAAAAC TAACAGGAGC TTACATACAA TTTTATCAAG TTTATATTTA TTAATCACCT
  R
  AATACTAGAA TTAATACTAG TAGATACTTT TGGTATATAC ATTAGTTTTG CTTTGAGACA
  GCCCTGGAGG GCCTGGACTT TCTATGTAGT CCAAGATGGC CTCAGATTCC TAGAGATCTA
  TCTACCTTCA CCAACTGAGT GCTGAGATTA AAGTTGAGTG CCACCAAGCC TGCTGGTTCA
  CACACAGTGT TTAGTTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357611068	MGP_WTSI_3_38384883	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238102844					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357611068	MGP_WTSI_3_38384883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38540110 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	1117 bp upstream
Cpgi13104	CpG island 13104	555 bp distal
Gm65619	predicted gene, 65619	478 bp downstream
Rr397648	regulatory region 397648	911 bp downstream
Rr575675	regulatory region 575675	1715 bp distal
Rr575676	regulatory region 575676	846 bp distal
Rr575677	regulatory region 575677	126 bp distal
Tssr28929	transcription start site region 28929	750 bp downstream
Tssr33057	transcription start site region 33057	1170 bp upstream
Tssr33058	transcription start site region 33058	1139 bp upstream
Tssr33059	transcription start site region 33059	1097 bp upstream