rs238099339 SNP Detail

Summary

• ID
  rs238099339
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110145559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGAGTGA ATTGGGTTCA
  CAACTTTGCC TTAAAAACTA TTTCCTAAGA GTTTAAGAAA GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAGA AAGAAAGAAA GGAAGGAAGA AAGGAAGGAA AGAAAAGCTG GGGGAAGGAG
  GAGGGCCACT GTCAGCTTCT ACCTTTCTGT CTTCTATGTG AGCTTTCTAC GACAGAGAAG
  K
  GTGAATGATT TATTTAAATG AATTTATTTT CCAACTTAGG GGCATGCTCT GCATTTAAAA
  AAAATATACT CACTTTTGCT TTCCCTACTG TGGTGAGGGT AAAATATGAT TCGGAAATTA
  AAGAGCCTCA TGTTTATTAC GTGTGCAGAC CACTCCTTTT GCTCAGCTGA ACAGGAGGTA
  TTTTGCCTCT CCCTTCGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255940	CHEV_4_109960967	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238099339					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110145559 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597418	regulatory region 597418	1484 bp distal
Rr597419	regulatory region 597419	983 bp distal
Rr597420	regulatory region 597420	345 bp distal
Rr597421	regulatory region 597421	1900 bp proximal
Tssr42786	transcription start site region 42786	1832 bp upstream
Tssr42787	transcription start site region 42787	1745 bp upstream
Tssr42788	transcription start site region 42788	1721 bp upstream
Tssr42789	transcription start site region 42789	1476 bp upstream
Tssr42790	transcription start site region 42790	828 bp upstream