rs238078206 SNP Detail

Summary

• ID
  rs238078206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121219744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCG CCCCCGGCCT GGCACGTGGA
  Y
  TCGAAGGCTG CTCCCCGGGT TTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320903395	CHEV_3_121129013	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238078206					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121219744 () rs orientation: forward

Symbol	Name	Function Class
Cnn3	calponin 3, acidic	446 bp upstream
Gm42928	predicted gene 42928	within coordinates
Gm42929	predicted gene 42929	1951 bp upstream
Rr397975	regulatory region 397975	222 bp upstream
Rr584073	regulatory region 584073	within coordinates
Rr584074	regulatory region 584074	686 bp proximal
Tssr31441	transcription start site region 31441	400 bp upstream
Tssr31442	transcription start site region 31442	473 bp upstream
Tssr35415	transcription start site region 35415	1377 bp downstream