rs238040158 SNP Detail

Summary

• ID
  rs238040158
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59838203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTCTGCT CTCAGCCACT GTGGCCCTCC
  CTGTATTTGC TATTTTCCCC AGGTGCTTTA AATAAAAAGA AAATCCTATC TCATCTCATA
  GCCAGCATTT CCCATGTGGT CAATATAGGt tctttctttg gacaaggtct taccatgtag
  M
  tcttgctggc tttgaatttg ctaggtagac cagattggcc ttgaattcac agagatctgc
  ctgcctgcct ctgcctcccc aatgctggga ttaaaggtgt tctctgtcat gcccagcCCC
  ATTTTGGTTT TGGTATTGCT ATTTATGTTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141514	CHEV_4_59851075	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238040158					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59838203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593158	regulatory region 593158			1543 bp distal
Rr593159	regulatory region 593159			134 bp distal
Snx30	sorting nexin family member 30			Intron
				mRNA-UTR